The limits of the metapopulation: Lineage fragmentation in a widespread terrestrial salamander (<i>Plethodon cinereus</i>)

2024-9-9

Phylogenetic biogeography inference using dynamic paleogeography models and explicit geographic ranges

2024-8-22

Hierarchical Heuristic Species Delimitation under the Multispecies Coalescent Model with Migration

2024-8-20

Phylogenomics and pervasive genome-wide phylogenetic discordance among fin whales (<i>Balaenoptera physalus</i>)

2024-8-19

PhyloJunction: a computational framework for simulating, developing, and teaching evolutionary models

2024-8-8

Persistent Gene Flow Suggests an Absence of Reproductive Isolation in an African Antelope Speciation Model

2024-8-4

Adaptive radiation without independent stages of trait evolution in a group of Caribbean anoles

2024-8-2

Bayesian Inference Under the Multispecies Coalescent with Ancient DNA Sequences

2024-7-30

Complex but Clear Allopolyploid Pattern of Subtribe Tussilagininae (Asteraceae: Senecioneae) Revealed by Robust Phylogenomic Evidence, with Development of a Novel Homeolog-Sorting Pipeline

2024-7-25

Exploring the Macroevolutionary Signature of Asymmetric Inheritance at Speciation

2024-7-24

Inferring Taxonomic Affinities and Genetic Distances Using Morphological Features Extracted from Specimen Images: a Case Study with a Bivalve dataset

2024-7-24

Biogeographic history of pigeons and doves drives the origin and diversification of their parasitic body lice

2024-7-22

Topology Testing and Demographic Modeling Illuminate a Novel Speciation Pathway in the Greater Caribbean Sea Following the Formation of the Isthmus of Panama

2024-7-19

<i>Blouch</i>: Bayesian Linear Ornstein-Uhlenbeck Models for Comparative Hypotheses

2024-7-19

Understanding Species Boundaries that Arise from Complex Histories: Gene Flow Across the Speciation Continuum in the Spotted Whiptail Lizards

2024-7-18

Biased gene introgression and adaptation in the face of chloroplast capture in <i>Aquilegia amurensis</i>

2024-7-13

Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies

2024-7-6

Exploring Phylogenetic Signal in Multivariate Phenotypes by Maximizing Blomberg’s <i>K</i>

2024-7-6

Expectation-Maximization enables Phylogenetic Dating under a Categorical Rate Model

2024-7-5

The fundamental role of character coding in Bayesian morphological phylogenetics

2024-7-4

Integrating genomics and biogeography to unravel the origin of a mountain biota: The case of a reptile endemicity hotspot in Arabia

2024-7-2

The influence of the number of tree searches on maximum likelihood inference in phylogenomics

2024-6-28

Phylo2Vec: a vector representation for binary trees

2024-6-27

Stochastic Character Mapping, Bayesian Model Selection, and Biosynthetic Pathways Shed New Light on the Evolution of Habitat Preference in Cyanobacteria

2024-6-27

Toward a semi-supervised learning approach to phylogenetic estimation

2024-6-25

Towards reliable detection of introgression in the presence of among-species rate variation

2024-6-24

Exon capture museomics deciphers the nine-banded armadillo species complex and identifies a new species endemic to the Guiana Shield

2024-6-22

Caught in the Act: Incipient Speciation at the Southern limit of <i>Viburnum</i> in the Central Andes

2024-6-4

Sequential Bayesian Phylogenetic Inference

2024-5-21

Inferring the Evolutionary Model of Community-Structuring Traits with Convolutional Kitchen Sinks

2024-5-20

Phylogenomics, Lineage Diversification Rates, and the Evolution of Diadromy in Clupeiformes (Anchovies, Herrings, Sardines, and Relatives)

2024-5-17

The rediscovery of a relict unlocks the first global phylogeny of whip spiders (Amblypygi)

2024-5-11

Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes

2024-5-11

Random-effects substitution models for phylogenetics via scalable gradient approximations

2024-5-7

Phylogenomic discordance is driven by wide-spread introgression and incomplete lineage sorting during rapid species diversification within rattlesnakes (Viperidae: <i>Crotalus</i> and <i>Sistrurus</i>)

2024-5-2

Museum genomics reveals the hybrid origin of an extinct crater lake endemic

2024-4-10

Museum skins enable identification of introgression associated with cytonuclear discordance

2024-4-5

The sequential direct and indirect effects of mountain uplift, climatic niche and floral trait evolution on diversification dynamics in an Andean plant clade

2024-3-30

Considering Decoupled Phenotypic Diversification Between Ontogenetic Phases in Macroevolution: An Example Using Triggerfishes (Balistidae)

2024-3-15

Distinguishing Cophylogenetic Signal from Phylogenetic Congruence Clarifies the Interplay Between Evolutionary History and Species Interactions

2024-3-13

Ecological predictors of organelle genome evolution: Phylogenetic correlations with taxonomically broad, sparse, unsystematized data

2024-3-9

Phylogenomics of Neogastropoda: The Backbone Hidden in the Bush

2024-3-8

Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles

2024-3-1

DateLife: Leveraging Databases and Analytical Tools to Reveal the Dated Tree of Life

2024-3-1

MAST: Phylogenetic Inference with Mixtures Across Sites and Trees

2024-2-29

Clockor2: Inferring Global and Local Strict Molecular Clocks Using Root-to-Tip Regression

2024-2-17

The Effect of Copy Number Hemiplasy on Gene Family Evolution

2024-2-8

Dating in the Dark: Elevated Substitution Rates in Cave Cockroaches (Blattodea: Nocticolidae) Have Negative Impacts on Molecular Date Estimates

2024-2-6

The Evolution of Multiple Color Mechanisms Is Correlated with Diversification in Sunbirds (Nectariniidae)

2024-1-30

Bayesian Phylogenetic Analysis on multi-core Compute Architectures: Implementation and evaluation of BEAGLE in RevBayes with MPI

2024-1-24