Design and implementation of a scalable high-performance computing (HPC) cluster for omics data analysis: achievements, challenges and recommendations in LMICs.

2024-1-2

RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes.

2024-1-2

TooManyCellsInteractive: A visualization tool for dynamic exploration of single-cell data.

2024-1-2

Chromosome-level genome of the poultry shaft louse <i>Menopon gallinae</i> provides insight into the host-switching and adaptive evolution of parasitic lice

2024-1-1

EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics

2024-1-1

Vulture: cloud-enabled scalable mining of microbial reads in public scRNA-seq data

2024-1-1

The telomere-to-telomere (T2T) genome of <i>Peucedanum praeruptorum</i> Dunn provides insights into the genome evolution and coumarin biosynthesis

2024-1-1

Correction to: mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome

2024-1-1

Data processing solutions to render metabolomics more quantitative: case studies in food and clinical metabolomics using Metabox 2.0

2024-1-1

PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

2024-1-1

On the variability of dynamic functional connectivity assessment methods

2024-1-1

MOBFinder: a tool for mobilization typing of plasmid metagenomic fragments based on a language model

2024-1-1

Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data

2024-1-1

Generalized open-source workflows for atomistic molecular dynamics simulations of viral helicases

2024-1-1

LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome

2024-1-1

A 3D printed plant model for accurate and reliable 3D plant phenotyping

2024-1-1

Efficient phylogenetic tree inference for massive taxonomic datasets: harnessing the power of a server to analyze 1 million taxa

2024-1-1

Open Data governance at the Canadian Open Neuroscience Platform (CONP): From the Walled Garden to the Arboretum

2024-1-1

Exploring the cobia (<i>Rachycentron canadum</i>) genome: unveiling putative male heterogametic regions and identification of sex-specific markers

2024-1-1

A ghost moth olfactory prototype of the lepidopteran sex communication

2024-1-1

GSC: efficient lossless compression of VCF files with fast query

2024-1-1

Disentangling river and swamp buffalo genetic diversity: initial insights from the 1000 Buffalo Genomes Project

2024-1-1

ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages

2024-1-1

The genomes of <i>Dahlia pinnata, Cosmos bipinnatus</i>, and <i>Bidens alba</i> in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis

2024-1-1

FAIR data retrieval for sensitive clinical research data in Galaxy

2024-1-1

Evolutionary genomics of three agricultural pest moths reveals rapid evolution of host adaptation and immune-related genes

2024-1-1

The probability of edge existence due to node degree: a baseline for network-based predictions

2024-1-1

Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder

2024-1-1

Habitat suitability maps for Australian flora and fauna under CMIP6 climate scenarios

2024-1-1

A high-quality chromosomal genome assembly of the sea cucumber <i>Chiridota heheva</i> and its hydrothermal adaptation

2024-1-1

Deciphering cancer genomes with GenomeSpy: a grammar-based visualization toolkit

2024-1-1

Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology

2024-1-1

Hecatomb: an integrated software platform for viral metagenomics

2024-1-1

A multi-omics data analysis workflow packaged as a FAIR Digital Object

2024-1-1

gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes

2024-1-1

CAT: a computational anatomy toolbox for the analysis of structural MRI data

2024-1-1

The chromosome-scale genome of <i>Magnolia sinica</i> (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP)

2024-1-1

Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants

2024-1-1

Innovative approach for high-throughput exploiting sex-specific markers in Japanese parrotfish <i>Oplegnathus fasciatus</i>

2024-1-1

Leveraging citizen science for monitoring urban forageable plants

2024-1-1

Proteome-wide association study and functional validation identify novel protein markers for pancreatic ductal adenocarcinoma

2024-1-1

An effective strategy for assembling the sex-limited chromosome

2024-1-1

A trade-off in evolution: the adaptive landscape of spiders without venom glands

2024-1-1

Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data

2024-1-1

Current status of global conservation and characterisation of wild and cultivated Brassicaceae genetic resources

2024-1-1

Machine Learning Made Easy (MLme): a comprehensive toolkit for machine learning–driven data analysis

2024-1-1

Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in <i>Eucalyptus</i>

2024-1-1

Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms

2024-1-1

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics

2024-1-1

Deep learning links localized digital pathology phenotypes with transcriptional subtype and patient outcome in glioblastoma

2024-1-1