近一个世纪以来，HEREDITAS 发表了原创的前沿研究和评论。作为隆德孟德尔学会的官方期刊，该期刊欢迎来自遗传学和基因组学所有领域的研究。感兴趣的主题包括人类和医学遗传学、动植物遗传学、微生物遗传学、农业和生物信息学。

For nearly a century, Hereditas has published original cutting-edge research and reviews. As the official journal of the Lund Mendel Society, it welcomes research from all areas of genetics and genomics. Topics of interest include human and medical genetics, plant and animal genetics, microbial genetics, agriculture, and bioinformatics.

近一个世纪以来，Hereditas 发表了原创的前沿研究和评论。作为隆德孟德尔学会的官方期刊，该期刊欢迎来自遗传学和基因组学各个领域的研究。感兴趣的主题包括人类和医学遗传学、动植物遗传学、微生物遗传学、农业和生物信息学。

Hereditas

Barley plants homozygous for the li mutation have no ligule or auricle structures on their leaves. The li locus was previously mapped to the long arm of chromosome 2(2H) by linkage to other morphological mutants. In this paper the genetic map location of li in relation to RFLP markers was determined by bulk segregant analysis and analysis of individual mutant F2 plants. The li locus was 1.3 cM distal to XBCD266 on the long arm of chromosome 2(2H). The advantages of this approach for rapidly determining the genetic map location of barley mutants are discussed.

Nicky Pratchett

David A. Laurie

Genetic Map Location of the Barley Developmental Mutant Liguleless in Relation to RFLP Markers

Abstract Purpose Mitochondria are involved in septic shock and inflammatory response syndrome, which severely affects the life security of patients. It is necessary to recognize and explore the immune-mitochondrial genes in septic shock. Methods The GSE57065 dataset was acquired from the Gene Expression Omnibus (GEO) database and filtered by limma and the weighted correlation network analysis (WGCNA) to identify mitochondrial-related differentially expressed genes (MitoDEGs) in septic shock. The function of MitoDEGs was analyzed using the Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA), respectively. The Protein-Protein Interaction (PPI) network composed of MitoDEGs was established using Cytoscape. Support Vector Machine Recursive Feature Elimination (SVM-RFE), Random Forest (RF), and Least Absolute Shrinkage and Selection Operator (LASSO) were used to identify diagnostic MitoDEGs, which were validated using receiver operating characteristic (ROC) analysis and Quantitative Real-time Reverse Transcription Polymerase Chain Reaction (qRT-PCR). Furthermore, the infiltration of immunocytes was analyzed using CIBERSORT, and the correlation between diagnostic MitoDEGs and immunocytes was explored using Spearman. Results A total of 44 MitoDEGs were filtered, and functional enrichment analysis showed they were associated with mitochondrial function, and the PPI network had 457 nodes and 547 edges. Four diagnostic genes, MitoDEGs, PGS1, C6orf136, THEM4, and EPHX2, were identified by three machine learning algorithms, and qRT-PCR results obtained similar expression levels as bioinformatics analysis. Furthermore, the diagnostic model constructed by the diagnostic genes had fine diagnostic efficacy. Immunocyte infiltration analysis showed that activated immunocytes were abundant and correlated with hub genes, with neutrophils accounting for the largest proportion in septic shock. Conclusions In this study, we recognized four immune-mitochondrial key genes (PGS1, C6orf136, THEM4, and EPHX2) in septic shock and designed a novel gene diagnosis model that provided a new and meaningful way for the diagnosis of septic shock.

Yu-Hui Cui

Chun-Rong Wu

Li-Ou Huang

Dan Xu

Jian-Guo Tang

Identification of immune-related mitochondrial metabolic disorder genes in septic shock using bioinformatics and machine learning

使用生物信息学和机器学习识别脓毒性休克中与免疫相关的线粒体代谢紊乱基因

Skin color is a well-recognized adaptive trait and has been studied extensively in humans. Understanding the genetic basis of adaptation of skin color in various populations has many implications in human evolution and medicine. Impressive progress has been made recently to identify genes associated with skin color variation in a wide range of geographical and temporal populations. In this review, we discuss what is currently known about the genetics of skin color variation. We enumerated several cases of skin color adaptation in global modern humans and archaic hominins, and illustrated why, when, and how skin color adaptation occurred in different populations. Finally, we provided a summary of the candidate loci associated with pigmentation, which could be a valuable reference for further evolutionary and medical studies. Previous studies generally indicated a complex genetic mechanism underlying the skin color variation, expanding our understanding of the role of population demographic history and natural selection in shaping genetic and phenotypic diversity in humans. Future work is needed to dissect the genetic architecture of skin color adaptation in numerous ethnic minority groups around the world, which remains relatively obscure compared with that of major continental groups, and to unravel the exact genetic basis of skin color adaptation.

Lian Deng

Shuhua Xu

Adaptation of human skin color in various populations

各种人群中人类肤色的适应性

HereditasVolume 126, Issue 1 p. 17-23 Open Access Evolution of the ITS Sequences of Ribosomal Dna in Enteromorpha (Chlorophyceae) Elina Leskinen, Corresponding Author Elina Leskinen Department of Genetics, Uppsala University, Box 7003, SE-750 07 Uppsala, SwedenElina Leskinen, Department of Genetics, Uppsala University, Box 7003, SE-750 07 Uppsala, SwedenSearch for more papers by this authorPekka Pamilo, Pekka Pamilo Department of Genetics, Uppsala University, Box 7003, SE-750 07 Uppsala, SwedenSearch for more papers by this author Elina Leskinen, Corresponding Author Elina Leskinen Department of Genetics, Uppsala University, Box 7003, SE-750 07 Uppsala, SwedenElina Leskinen, Department of Genetics, Uppsala University, Box 7003, SE-750 07 Uppsala, SwedenSearch for more papers by this authorPekka Pamilo, Pekka Pamilo Department of Genetics, Uppsala University, Box 7003, SE-750 07 Uppsala, SwedenSearch for more papers by this author First published: 11 May 2004 https://doi.org/10.1111/j.1601-5223.1997.00017.xCitations: 9AboutPDF ToolsExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat Abstract Ribosomal DNA (rDNA) region, including the 3 end of the 18s rRNA gene, the entire 5.8s rRNA gene, the 5' end of the 28s rRNA gene, and the internal transcribed spacers ITS 1 and ITS 2, of Enteromorpha green algae from the Baltic Sea, were sequenced. The evolution of the Enteromorpha sequences differed from those of other green algae in several important ways. The ITS regions were short and had a high nucleotide bias. The frequency of nucleotides G and C was up to 70%, in the ITS sequences, whereas the frequencies were close to 50 YOin the 5.8s rDNA. Furthermore, the sequence divergence was much higher in ITS 1 than in ITS 2. Two haplotypes, differing only by two nucleotides, were detected in the E. intestinalislcompressa complex. The difference coincides with a morphological differentiation (branching of thalli) and may represent distinct gene pools. 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An experimental assessment of the status of the species Enteromorpha intestinalis (L.) Link and Enteromorpha compressa (L.) Grev. J. Mar. Biol. Ass. U.K. 53: 895–904. 10.1017/S0025315400022554 Web of Science®Google Scholar Snoeijs P, (1992). Ecology and taxonomy of Enteromorpha species in the vicinity of the Forsmark nuclear power plant (Bothnian Sea). Acta Phytogeogr. Suec. 78: 11–23. Google Scholar Swofford DL, (1993). PAUP: Phylogenetic analysis using parsimony, Version 3.1. Computer program distributed by the Illinois Natural History Survey, Champaign , Illinois . Google Scholar Takaiwa R, Oono K and Sugiura M, (1985). Nucleotide sequence of the 17s-25s spacer region from rice rDNA. Plant Mol. Biol. 4: 355–364. 10.1007/BF02418257 CASPubMedWeb of Science®Google Scholar Torres RA, Ganal M and Hemleben V, (1990). GC balance in the internal transcribed spacers ITS 1 and ITS 2 of nuclear ribosomal RNA genes. J. Mol. 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In: PCR protocols, (eds MA Innis, DH Geleand, JJ Sninsky and TJ White) Academic Press, New York , p. 315–322. Google Scholar Wojciechowski MF, Sanderson MJ, Baldwin BG and Donoghue MJ, (1993). Monophyly of aneuploid Astragalus (Fabaceae): Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Am. J. Bot. 80: 711–722. 10.1002/j.1537-2197.1993.tb15241.x CASWeb of Science®Google Scholar Citing Literature Volume126, Issue1March 1997Pages 17-23 ReferencesRelatedInformation

Elina Leskinen

Pekka Pamilo

Evolution of the ITS Sequences of Ribosomal Dna in Enteromorpha (Chlorophyceae)

石莼属（绿藻门）核糖体DNA的ITS序列演化

The disability rate associated with rheumatoid arthritis (RA) ranks high among inflammatory joint diseases. However, the cause and potential molecular events are as yet not clear. Here, we aimed to identify differentially expressed genes (DEGs), pathways and immune infiltration involved in RA utilizing integrated bioinformatics analysis and investigating potential molecular mechanisms.The expression profiles of GSE55235, GSE55457, GSE55584 and GSE77298 were downloaded from the Gene Expression Omnibus database, which contained 76 synovial membrane samples, including 49 RA samples and 27 normal controls. The microarray datasets were consolidated and DEGs were acquired and further analyzed by bioinformatics techniques. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of DEGs were performed using R (version 3.6.1) software, respectively. The protein-protein interaction (PPI) network of DEGs were developed utilizing the STRING database. Finally, the CIBERSORT was used to evaluate the infiltration of immune cells in RA.A total of 828 DEGs were recognized, with 758 up-regulated and 70 down-regulated. GO and KEGG pathway analyses demonstrated that these DEGs focused primarily on cytokine receptor activity and relevant signaling pathways. The 30 most firmly related genes among DEGs were identified from the PPI network. The principal component analysis showed that there was a significant difference between the two tissues in infiltration immune.This study shows that screening for DEGs, pathways and immune infiltration utilizing integrated bioinformatics analyses could aid in the comprehension of the molecular mechanisms involved in RA development. Besides, our study provides valuable data related to DEGs, pathways and immune infiltration of RA and may provide new insight into the understanding of molecular mechanisms.

Yanzhi Ge

Li Zhou

Zuxiang Chen

Yingying Mao

Ting Li

Peijian Tong

Letian Shan

Identification of differentially expressed genes, signaling pathways and immune infiltration in rheumatoid arthritis by integrated bioinformatics analysis

通过综合生物信息学分析鉴定类风湿性关节炎中差异表达基因、信号通路及免疫浸润

Abstract Background Breast cancer is the most common malignancy among women worldwide, characterized by complex molecular and cellular heterogeneity. Despite advances in diagnosis and treatment, there is an urgent need to identify reliable biomarkers and therapeutic targets to improve early detection and personalized therapy. The OAS (2′-5′-oligoadenylate synthetase) family genes, known for their roles in antiviral immunity, have emerged as potential regulators in cancer biology. This study aimed to explore the diagnostic and functional relevance of OAS family genes in breast cancer. Methodology Breast cancer cell lines and controls were cultured under specific conditions, and DNA and RNA were extracted for downstream analyses. RT-qPCR, bisulfite sequencing, and Western blotting were employed to assess gene expression, promoter methylation, and knockdown efficiency of OAS family genes. Functional assays, including CCK-8, colony formation, and wound healing, evaluated cellular behaviors, while bioinformatics tools (UALCAN, GEPIA, HPA, OncoDB, cBioPortal, and others) validated findings and explored correlations with clinical data. Results The OAS family genes (OAS1, OAS2, OAS3, and OASL) were found to be significantly upregulated in breast cancer cell lines and tissues compared to normal controls. This overexpression was strongly associated with reduced promoter methylation. Receiver operating characteristic (ROC) analysis demonstrated high diagnostic accuracy, with area under the curve (AUC) values exceeding 0.93 for all four genes. Increased OAS expression correlated with advanced cancer stages and poor overall survival in breast cancer patients. Functional analysis revealed their involvement in critical biological processes, including immune modulation and oncogenic pathways. Silencing OAS genes in breast cancer cells significantly inhibited cell proliferation and colony formation, while unexpectedly enhancing migratory capacity. Additionally, correlations with immune cell infiltration, molecular subtypes, and drug sensitivity highlighted their potential roles in the tumor microenvironment and therapeutic response. Conclusion The findings of this study established OAS family genes as potential biomarkers and key players in breast cancer progression, offering promise as diagnostic biomarkers and therapeutic targets to address unmet clinical needs.

Jinjun Lu

Lu Yang

Xinghai Yang

Bin Chen

Zheqi Liu

Investigating the clinical significance of OAS family genes in breast cancer: an in vitro and in silico study

探究OAS家族基因在乳腺癌中的临床意义：一项体外和体内研究

Abstract Background Platinum-based chemotherapy is one of the main treatments for lung adenocarcinoma (LUAD). However, the toxic side effects and drug resistance of chemotherapeutic drugs on normal cells are still a thorny problem in clinical treatment. Dendrobium is one of the three largest genera of Orchidaceous family, which has ornamental and medicinal value. Dendrobium is mainly distributed in the tropics and subtropics of South Asia, Oceania and other regions, with 1547 species of Dendrobium currently known. In China, “Shi hu” and “Tie pi shi hu” are well-known traditional medicines and have been included in the Chinese Pharmacopoeia (Editorial Board of Chinese Pharmacopoeia, 2020). Erianin is a natural product isolated from Dendrobium and is considered as a potential anticancer molecule due to its remarkable anti-tumor effects through various mechanisms, among which induced cancer cell apoptosis, inhibited invasion and migration. This study preliminarily explored the mechanism of Erianin inhibiting the progression of cisplatin (DDP) resistant LUAD in vivo and in vitro. Methods The effect of Erianin on the proliferation of DDP-resistant LUAD cells was detected by CCK-8 assay, wound healing assay and cloning assay. Transwell assay was used to evaluate the effect of Erianin on cell invasion and migration. The changes of cell cycle and apoptosis were detected by flow cytometry and TUNEL assay. Finally, the effects of Erianin on cell function and signaling pathway-related protein expression in vivo and in vitro were examined based on the enrichment analysis. Results Erianin could inhibit the proliferation, invasion and migration, induce apoptosis, altered cell cycle of DDP-resistant LUAD cells, and reverse the resistance to DDP. Western blotting results showed that Erianin exerted its anti-tumor effects by regulating the Wnt/β-catenin cascade in DDP-resistant LUAD cells. Conclusion Erianin may exerted its anti-tumor effect in DDP-resistant LUAD cells by regulating the Wnt3/β-Catenin/Survivin/Bcl-2/Caspase-3/Cyclin D1 axis.

Lingxue Tang

Yiling Ruan

Beibei Wang

Mingjun Zhang

Jie Xue

Tong Wang

Erianin inhibits the progression of DDP-resistant lung adenocarcinoma by regulating the Wnt/β-catenin pathway and activating the caspase-3 for apoptosis in vitro and in vivo

Erianin通过调节Wnt/β-catenin通路并激活caspase-3抑制DDP耐药性肺腺癌的进展：体外和体内研究

Indole-3-acetic acid (IAA), an indole analog produced by intestinal microorganisms metabolizing tryptophan, has anti-inflammatory and antioxidant properties and thus has potential applications in ovarian protection, although the exact mechanism is unknown. The present study preliminarily investigated the pharmacological mechanism of IAA in alleviating diminished ovarian reserve (DOR) by network pharmacology and molecular docking.

Jianxiu Zheng

Liyan Wang

Ahui Liu

Haofei Shen

Bin Wang

Yanbiao Jiang

Panpan Jing

Defeng Guan

Liulin Yu

Xuehong Zhang

Predicting the therapeutic role and potential mechanisms of Indole-3-acetic acid in diminished ovarian reserve based on network pharmacology and molecular docking

基于网络药理学和分子对接预测吲哚-3-乙酸在卵巢储备功能减退中的治疗作用及潜在机制

Abstract Infertility is a global problem being associated with emotional and financial burden. Recent studies have shown contribution of a group of non-coding RNAs, namely circular RNAs (circRNAs) to the etiology of some infertility conditions. CircRNA are transcribed from exons and form a circular RNA molecule, being abundant in eukaryotes. Traditionally classified as non-coding RNA, these transcripts are endogenously produced through either non-canonical back-splicing or linear splicing, typically produced from precursor messenger ribonucleic acid (pre-mRNA). While during the canonical splicing process the 3’ end of the exon is joined to the 5’ end of the succeeding exon to form linear mRNA, during backsplicing, the 3’ end to the 5’ end of the same exon is joined to make a circular molecule. circRNAs are involved in the regulation of several aspects of spermatogenesis. They appear to influence how stem germ cells grow and divide during the sperm production process. Malfunctions in circRNA activity could contribute to male infertility issues stemming from abnormalities in spermatogenesis. In the current review, we highlight the exciting potential of circRNAs as key players in the male fertility.

Abbreviation	Hereditas
Journal Impact	2.08
Quartiles(Global)	GENETICS & HEREDITY(Q3)

ISSN	0018-0661, 1601-5223
h-index	56

Publication Information	Publisher: BioMed Central Ltd，Publishing cycle: Bimonthly，Journal Type: journal，Open Access Journals: Yes
Basic data	Year of publication: 1920，Proportion of original research papers: 97.83%，Self Citation Rate:0.00%， Gold OA Rate: 100.00%
Journal Fees	$2490Details
Average review cycle	网友分享经验：>12周，或约稿
Average recruitment ratio	网友分享经验：容易

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Genetic Map Location of the Barley Developmental Mutant Liguleless in Relation to RFLP Markers

Identification of immune-related mitochondrial metabolic disorder genes in septic shock using bioinformatics and machine learning

Adaptation of human skin color in various populations

Evolution of the ITS Sequences of Ribosomal Dna in Enteromorpha (Chlorophyceae)

Identification of differentially expressed genes, signaling pathways and immune infiltration in rheumatoid arthritis by integrated bioinformatics analysis

Investigating the clinical significance of OAS family genes in breast cancer: an in vitro and in silico study

Identification of immune-related mitochondrial metabolic disorder genes in septic shock using bioinformatics and machine learning

Erianin inhibits the progression of DDP-resistant lung adenocarcinoma by regulating the Wnt/β-catenin pathway and activating the caspase-3 for apoptosis in vitro and in vivo

Predicting the therapeutic role and potential mechanisms of Indole-3-acetic acid in diminished ovarian reserve based on network pharmacology and molecular docking

Circular RNAs: novel noncoding players in male infertility